PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008855-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 807aa MW: 87084.7 Da PI: 6.0864

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008855-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353	4.6e-108	443	806	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++L+++Ae v++g+ a+ +Larl+++ sp g+p+qR+a+yf+eAL+ l+ +++++ + +p+++++ +++ ++ a+k+fse+sP+l+f+++ NNU_008855-RA 443 LVDQLFKAAELVEAGNSVHARGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLT-SNNTATSPSPRNSTHFDVVLKIGAYKAFSEISPLLQFANF 537 6899************************************************9.66667777888888889******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190 t+Nqa+lea+++++r+HiiDfdi+ G+QW++++q+Las+p+g+psl+iT++ sp+s+++ el+ t+e+L++fA+ lg+ f+ +++ ++++ + NNU_008855-RA 538 TCNQALLEALDRSDRIHIIDFDIGIGGQWASFMQELASKPGGAPSLKITAFTSPTSHDQLELRLTRENLTHFANDLGIAFDLDIVNLDSFDPAswS 633 ********************************************************************************977776654338 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l L+v+ Ea+aVnl + + l+s +++L++vk+lsPk+vv v++ +d+++ +F ++fl +l+ +s l+dsl+a +s++ +k+E NNU_008855-RA 634 LAPLHVSDSEAVAVNLPVGSSVTQ-----LSS-VPSLLRFVKQLSPKIVVSVDRGCDRSDLPFSHHFLYSLQSFSILLDSLDAV-NVNSDAVHKIE 722 8899*********9665554.....333.668*****************************************665.5799*** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++l++++i+ +v ++++ e++ Wr+ + +aGF+pvp+++++++qa++l+++ +++g++ve++++sl+l+W++ +Lvs+SaWr NNU_008855-RA 723 KFLFQPRIEGIVLGRQRA----PEKMLPWRNVFASAGFSPVPFTNFTETQAECLVKRLHVRGFHVEKRQASLILCWQRGELVSASAWR 806 *********99998....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.685	417	786	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-105	443	806	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MPFNLQGKGV LEVAEISSIS GAKWKKEATC LGNEPTSVLD TRRSPSPPTS TSTLSSSLGG 60 GCGSTDTAGV AAVSDNPPQK WPPTQQQEDS SAAVAESGSC VGGGVGGSRK DEWTSEXQPI 120 PTALEIVSGG ATGAEKCGLG MEDWESVLSE SAASPSQEQS LLRWIMGDVD DPTSGLKHLL 180 QGGGSSEFEG NAGGFGIVDQ GFGFESIGAG ASLSGNVMGT INPSLAFPGS VFPPNNNSNS 240 NSNNQNGRVG SVTSVPNASP LPNYKVPCFA SNNNGTPPNP IFPPSANNLP LPISFPPGVF 300 YPQQQHQQPP QLEPADEKPQ LFNPQLLMNQ QQAHHPQNPP FLVPLSYAQQ EQHLLLPPQP 360 KRPHSAIDPS CQIPPKVPFA DSGQELFLRR QQLQQQQQQQ EQQGFPQLQL LPPHLQQRPT 420 TMATKPKVVG TGDEVAHQQQ QALVDQLFKA AELVEAGNSV HARGILARLN HQLSPVGKPL 480 QRAAFYFKEA LQLLLLTSNN TATSPSPRNS THFDVVLKIG AYKAFSEISP LLQFANFTCN 540 QALLEALDRS DRIHIIDFDI GIGGQWASFM QELASKPGGA PSLKITAFTS PTSHDQLELR 600 LTRENLTHFA NDLGIAFDLD IVNLDSFDPA SWSLAPLHVS DSEAVAVNLP VGSSVTQLSS 660 VPSLLRFVKQ LSPKIVVSVD RGCDRSDLPF SHHFLYSLQS FSILLDSLDA VNVNSDAVHK 720 IEKFLFQPRI EGIVLGRQRA PEKMLPWRNV FASAGFSPVP FTNFTETQAE CLVKRLHVRG 780 FHVEKRQASL ILCWQRGELV SASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MPFNLQGKGV LEVAEISSIS GAKWKKEATC LGNEPTSVLD TRRSPSPPTS TSTLSSSLGG  60
GCGSTDTAGV AAVSDNPPQK WPPTQQQEDS SAAVAESGSC VGGGVGGSRK DEWTSEXQPI  120
PTALEIVSGG ATGAEKCGLG MEDWESVLSE SAASPSQEQS LLRWIMGDVD DPTSGLKHLL  180
QGGGSSEFEG NAGGFGIVDQ GFGFESIGAG ASLSGNVMGT INPSLAFPGS VFPPNNNSNS  240
NSNNQNGRVG SVTSVPNASP LPNYKVPCFA SNNNGTPPNP IFPPSANNLP LPISFPPGVF  300
YPQQQHQQPP QLEPADEKPQ LFNPQLLMNQ QQAHHPQNPP FLVPLSYAQQ EQHLLLPPQP  360
KRPHSAIDPS CQIPPKVPFA DSGQELFLRR QQLQQQQQQQ EQQGFPQLQL LPPHLQQRPT  420
TMATKPKVVG TGDEVAHQQQ QALVDQLFKA AELVEAGNSV HARGILARLN HQLSPVGKPL  480
QRAAFYFKEA LQLLLLTSNN TATSPSPRNS THFDVVLKIG AYKAFSEISP LLQFANFTCN  540
QALLEALDRS DRIHIIDFDI GIGGQWASFM QELASKPGGA PSLKITAFTS PTSHDQLELR  600
LTRENLTHFA NDLGIAFDLD IVNLDSFDPA SWSLAPLHVS DSEAVAVNLP VGSSVTQLSS  660
VPSLLRFVKQ LSPKIVVSVD RGCDRSDLPF SHHFLYSLQS FSILLDSLDA VNVNSDAVHK  720
IEKFLFQPRI EGIVLGRQRA PEKMLPWRNV FASAGFSPVP FTNFTETQAE CLVKRLHVRG  780
FHVEKRQASL ILCWQRGELV SASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-38	449	805	25	378	Protein SCARECROW
5b3h_A	5e-38	449	805	24	377	Protein SCARECROW
5b3h_D	5e-38	449	805	24	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258971.1	0.0	PREDICTED: scarecrow-like protein 6
TrEMBL	A0A1U7ZYP2	0.0	A0A1U7ZYP2_NELNU; scarecrow-like protein 6
STRING	XP_010258971.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-115	GRAS family protein