PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009014-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 299aa    MW: 33294.1 Da    PI: 6.1687
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009014-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34146203259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers++dp++v++tYeg+H+h+
  NNU_009014-RA 146 EDGYRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSDDPTIVVTTYEGQHTHP 203
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.2E-982298IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.805.5E-35130205IPR003657WRKY domain
SuperFamilySSF1182901.44E-29137205IPR003657WRKY domain
PROSITE profilePS5081131.72140205IPR003657WRKY domain
SMARTSM007743.4E-40145204IPR003657WRKY domain
PfamPF031062.6E-27146203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
METENSIGAA VTAFSDQIPT NFALSSIFDT PFGGEKWSLG FMDLLGVQDF TPSMFDLLQQ  60
PSMPSPPPIV SVGEYSSDIL NLPATPNSSS ISSSSTEAAN DEQSKAVEEE EQEKTKNQLK  120
SNKKNKKRQK EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPFPRSYYR CTTATCGVKK  180
RVERSSDDPT IVVTTYEGQH THPSPVMPRG ISTGISPDSS SYAAAFAMAP MQLTQPHHDF  240
QEQQQPYFHN LLPPSLNYNS SVSLAPTFVP ERRFFTSATS FIRDHGLLQD IVPSDMRSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-281382051077Probable WRKY transcription factor 4
2lex_A8e-281382051077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259241.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotO229002e-59WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8AAY80.0A0A1U8AAY8_NELNU; WRKY transcription factor
STRINGXP_010259241.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-53WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]