PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009046-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 163aa    MW: 18776.4 Da    PI: 8.3173
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009046-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-10941272255
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp++ee+ +LA+ +gL+++q+ +WF N+R ++
  NNU_009046-RA  94 WPYPTEEEKMKLAEITGLDQKQINNWFINQRKRH 127
                    58*****************************985 PP
2ELK38.72.2e-134768122
            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                   ELK++LlrKYsgyL+sL++EF+
  NNU_009046-RA 47 ELKEMLLRKYSGYLSSLRKEFL 68
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121311.3664767IPR005539ELK domain
SMARTSM011884.4E-74768IPR005539ELK domain
PfamPF037891.3E-104768IPR005539ELK domain
PROSITE profilePS5007112.82767130IPR001356Homeobox domain
SMARTSM003891.4E-1369134IPR001356Homeobox domain
SuperFamilySSF466895.13E-2069139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-2872132IPR009057Homeodomain-like
CDDcd000865.26E-1379131No hitNo description
PfamPF059202.0E-1787126IPR008422Homeobox KN domain
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
WILCKPALIL ASFSDDTAVT SEEELSCGEV EASESQESCG PRPGDKELKE MLLRKYSGYL  60
SSLRKEFLKK RKKGKLPKDA RMTLLDWWNT HYRWPYPTEE EKMKLAEITG LDQKQINNWF  120
INQRKRHWKP SEDMRFALME GVSGTGGVHS MCFNRGGTGN DVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16271LRKEFLKKRK
26872KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259298.11e-108PREDICTED: homeobox protein knotted-1-like 1 isoform X1
RefseqXP_010259299.11e-108PREDICTED: homeobox protein knotted-1-like 1 isoform X1
RefseqXP_010259300.11e-108PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotA2Y0072e-54KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL52e-54KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLA0A1U8A3C31e-107A0A1U8A3C3_NELNU; homeobox protein knotted-1-like 1 isoform X2
TrEMBLA0A1U8AB391e-107A0A1U8AB39_NELNU; homeobox protein knotted-1-like 1 isoform X1
STRINGXP_010259298.11e-108(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-41KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]