PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009076-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

CAMTA

Protein Properties

Length: 929aa MW: 105300 Da PI: 7.5812

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009076-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.3	1e-51	29	145	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++e ++rwl+++ei+aiL n++ +++ ++ + p+sg++iL++rk++r+frkDG++wkkkkdgktv+E+he+LKvg e +++yYah+e+np+f r NNU_009076-RA 29 MEEaRTRWLRPNEIHAILCNHTYFTVNVKPINLPQSGTIILFDRKVLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGDEERIHVYYAHGEDNPNFVR 124 45669***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylev 117 rcywlL++++e+ivlvhy+e+ NNU_009076-RA 125 RCYWLLDKKQEHIVLVHYRET 145 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.637	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.1E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.9E-13	378	464	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.1E-16	560	675	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.28E-15	562	672	No hit	No description
Pfam	PF12796	2.7E-6	562	642	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.79E-16	567	675	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.626	568	675	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.701	613	645	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-6	613	642	IPR002110	Ankyrin repeat
SMART	SM00248	3500	652	681	IPR002110	Ankyrin repeat
SMART	SM00015	58	757	779	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.272	761	787	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.108	777	806	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	799	821	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.823	800	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.6E-4	801	821	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	882	904	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	884	912	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 929 aa Download sequence Send to blast
MERSVPGRLA GSEIHGFRTM EDLDVPSMME EARTRWLRPN EIHAILCNHT YFTVNVKPIN 60 LPQSGTIILF DRKVLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGDEERIH VYYAHGEDNP 120 NFVRRCYWLL DKKQEHIVLV HYRETLEAQG SPVTPVNSNS SPENSGPFAS RVLSEENDSG 180 ANHGFYAGSG SPLVSESAEL DDHFSVLHEI NTLEWEDLLG AQDASNPSPP KRGEVAHLEQ 240 QNLYELRGSL HSQGSFLPTN SLPTTLSSFR HPTEQMAKSA SIDIRPPNSG YVQTAGVISN 300 NQWKDFEKTD ESLNASFGNS LLTQDSFGRW MNCIISDSPG SIDNVQLQSS ISTTHETTLS 360 EITDHHHHTS TQGQVFSITD VSPSWAFSTE ETKVIMVGFF HAEYSHIAES NLLCVIGDVC 420 VPVEMIQVGV FRCMASPNNT GFVDLYLSLD GRTPISQVLT FEYRSPLIDN QGASQEDKCK 480 WKEFQIQLRL ARLLFSTNNS LSILSSKVLP NALKEAKKFA LMTSAIEKDW AYLIKSIGNS 540 GIPFLQAKDI LFELTLKNKL QEWLLERVAE GSKTTIRDTR GQGVIHLCAI LGYTWAVYPY 600 SRSGLSLDFR DAYGWTALHW AAFYGREKMV AVLLSAGAKP NLVTDPTPEF PGGRTAADLA 660 SKNGYEGLSA YLAEKALIFQ FYEMKISGNA SGSLGTNTTT YTSPEALNED ELCLKDTLAA 720 YRTAADAAAH IQAAFRQHSL KLKEKAVQLA NPEMEARNII AAMKIQHAFR NYETRKKMTA 780 AARIQYRFRT WKIRKDFLNM RRQAIKIQAV FRGYQVRRQY RKILWSVGVL EKVILRWRLK 840 RKGFRGLSVE LEPTQEMPVD QNQESDVEDD FFRVSRKQAE ERVERSVVRV QAMFRSKQAQ 900 QEYRRMKLAY DQAALEYEDL LDPEVRNQK

Sequence ? help Back to Top

Protein Sequence Length: 929 aa Download sequence Send to blast

MERSVPGRLA GSEIHGFRTM EDLDVPSMME EARTRWLRPN EIHAILCNHT YFTVNVKPIN  60
LPQSGTIILF DRKVLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGDEERIH VYYAHGEDNP  120
NFVRRCYWLL DKKQEHIVLV HYRETLEAQG SPVTPVNSNS SPENSGPFAS RVLSEENDSG  180
ANHGFYAGSG SPLVSESAEL DDHFSVLHEI NTLEWEDLLG AQDASNPSPP KRGEVAHLEQ  240
QNLYELRGSL HSQGSFLPTN SLPTTLSSFR HPTEQMAKSA SIDIRPPNSG YVQTAGVISN  300
NQWKDFEKTD ESLNASFGNS LLTQDSFGRW MNCIISDSPG SIDNVQLQSS ISTTHETTLS  360
EITDHHHHTS TQGQVFSITD VSPSWAFSTE ETKVIMVGFF HAEYSHIAES NLLCVIGDVC  420
VPVEMIQVGV FRCMASPNNT GFVDLYLSLD GRTPISQVLT FEYRSPLIDN QGASQEDKCK  480
WKEFQIQLRL ARLLFSTNNS LSILSSKVLP NALKEAKKFA LMTSAIEKDW AYLIKSIGNS  540
GIPFLQAKDI LFELTLKNKL QEWLLERVAE GSKTTIRDTR GQGVIHLCAI LGYTWAVYPY  600
SRSGLSLDFR DAYGWTALHW AAFYGREKMV AVLLSAGAKP NLVTDPTPEF PGGRTAADLA  660
SKNGYEGLSA YLAEKALIFQ FYEMKISGNA SGSLGTNTTT YTSPEALNED ELCLKDTLAA  720
YRTAADAAAH IQAAFRQHSL KLKEKAVQLA NPEMEARNII AAMKIQHAFR NYETRKKMTA  780
AARIQYRFRT WKIRKDFLNM RRQAIKIQAV FRGYQVRRQY RKILWSVGVL EKVILRWRLK  840
RKGFRGLSVE LEPTQEMPVD QNQESDVEDD FFRVSRKQAE ERVERSVVRV QAMFRSKQAQ  900
QEYRRMKLAY DQAALEYEDL LDPEVRNQK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259339.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8A3G4	0.0	A0A1U8A3G4_NELNU; calmodulin-binding transcription activator 5 isoform X1
STRING	XP_010259339.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]