PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009108-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 502aa MW: 56777.4 Da PI: 7.3136

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009108-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.6e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel NNU_009108-RA 62 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKPSDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNVHNHELL 155 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-18	62	155	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.582	295	330	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-7	301	328	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	305	332	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MERMSEGMNL VIETSENGTD LSPDDIGTIE EMPEDTILSR QTSVNLVPFI GQRFVSQDAA 60 YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKPSDD GKLQRNRKSS 120 RCGCQAYMRI VKRADFDVPE WRITGFSNVH NHELLKSNEV RLLPAYCTIS ADDKSRICMF 180 AKAGMTSTFQ SESINAFIQR FLSAQSQLDH FVEQVAVVVD FRDQAGTKQK MQRKLHKVCL 240 KTGSPIESHA ATVLTPYAFC KLQEELVLAP QYASLQTEED CFHVRHHTQM DGGCKVIWVP 300 REELISCSCH QFEFSGILCR HVLRVLSTNN CFHIPERYLP NRWRCVSSSS MKPFQTNAPR 360 EHAERIQLFQ SMVSTLITES VETEERLNAA YEQIAMVLSR IKEFPRLTHS TNDIAYDSPS 420 DSLILPEVED SDGIVQSFTT GNPHESISSL GKLKERRPRD GVDISRKRRR CSVPCCGQFG 480 HDATDCPMMG GDGLNGDGLG FL

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MERMSEGMNL VIETSENGTD LSPDDIGTIE EMPEDTILSR QTSVNLVPFI GQRFVSQDAA  60
YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKPSDD GKLQRNRKSS  120
RCGCQAYMRI VKRADFDVPE WRITGFSNVH NHELLKSNEV RLLPAYCTIS ADDKSRICMF  180
AKAGMTSTFQ SESINAFIQR FLSAQSQLDH FVEQVAVVVD FRDQAGTKQK MQRKLHKVCL  240
KTGSPIESHA ATVLTPYAFC KLQEELVLAP QYASLQTEED CFHVRHHTQM DGGCKVIWVP  300
REELISCSCH QFEFSGILCR HVLRVLSTNN CFHIPERYLP NRWRCVSSSS MKPFQTNAPR  360
EHAERIQLFQ SMVSTLITES VETEERLNAA YEQIAMVLSR IKEFPRLTHS TNDIAYDSPS  420
DSLILPEVED SDGIVQSFTT GNPHESISSL GKLKERRPRD GVDISRKRRR CSVPCCGQFG  480
HDATDCPMMG GDGLNGDGLG FL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	465	469	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259385.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Refseq	XP_010259386.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	5e-92	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1U8A3K6	0.0	A0A1U8A3K6_NELNU; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_010259385.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-94	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]