PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009116-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 140aa    MW: 15780.3 Da    PI: 10.7042
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009116-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.98.8e-213064135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C+ CgttkTplWR gp g+ktLCnaCG++yrkk++
  NNU_009116-RA 30 CADCGTTKTPLWRGGPAGPKTLCNACGIRYRKKRR 64
                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2572460IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-162489IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-142464No hitNo description
Gene3DG3DSA:3.30.50.104.3E-172864IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.64E-152964No hitNo description
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PfamPF003202.1E-183064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MVDLSEKGSE SEDMNISSEE GQRNEAKKSC ADCGTTKTPL WRGGPAGPKT LCNACGIRYR  60
KKRRAVLGFN KGGPEREKKP AAAKNKKLGV SLKQLRLLTL RREVWLERWT IAKQRKLGEE  120
EQAAVLLMAL SMHRKREKET
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259404.12e-97PREDICTED: GATA transcription factor 15-like
RefseqXP_010259405.12e-97PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG101e-37GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A1U7ZZU25e-96A0A1U7ZZU2_NELNU; GATA transcription factor 15-like
STRINGXP_010259404.18e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-40GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]