PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009154-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 314aa    MW: 34956.4 Da    PI: 4.747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009154-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1974122355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  NNU_009154-RA  74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 122
                    9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77573130IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2273131IPR016177DNA-binding domain
SMARTSM003803.1E-3873136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3273131IPR001471AP2/ERF domain
PfamPF008474.7E-1274122IPR001471AP2/ERF domain
PRINTSPR003678.3E-127485IPR001471AP2/ERF domain
CDDcd000183.12E-3374131No hitNo description
PRINTSPR003678.3E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCGGAIIAEF IPRNRSRRVT ASDLWPNSPF ANFNDDFESD FRRFSEEENT KKRASPSGDS  60
SGENNGKRKR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI  120
RGKKAKVNFP NEDDEYSASN TQLPSNRNPQ PSNQNFYGGL PKNLDFGFPG NNLNQVESYP  180
VNNGYYCVPP AMNPNPLFFH PNGGDMCASA SRSEGTDSSP SFMGSGQDGG DACFEHVTVK  240
EETPETKGTL IDDDEVQKLS EELMAFESYM LYQIPCDGGV EQQPFATSNP VQDAVVGVNS  300
IDLWSFDDAP AAMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2158132574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15070KKRASPSGDSSGENNGKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259467.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A1U8A3S70.0A0A1U8A3S7_NELNU; ethylene-responsive transcription factor RAP2-12-like
STRINGXP_010259467.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-33ethylene-responsive element binding protein