PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009155-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 258aa    MW: 28668.2 Da    PI: 9.0821
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009155-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2093142356
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa a+++a+k+++g+
  NNU_009155-RA  93 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAAMAYDQAAKRIRGN 142
                    9*******.**********954...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-3892155IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2292149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3192150IPR001471AP2/ERF domain
CDDcd000182.58E-3192148No hitNo description
PROSITE profilePS5103223.36792149IPR001471AP2/ERF domain
PfamPF008471.0E-1493141IPR001471AP2/ERF domain
PRINTSPR003672.7E-1193104IPR001471AP2/ERF domain
PRINTSPR003672.7E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MCGGAIISDF IAAKRGRKLT TQDLWSEFDT ISDLLLKDSL SSSSSLTELE KKTQPNGGTT  60
GGNNKSTKKT NTVGTDQEGK SKNKETRARK NIYRGIRQRP WGKWAAEIRD PRKGVRVWLG  120
TYNTAEEAAM AYDQAAKRIR GNKAKLNFSE MKPESVPSPQ PPPAKRRCCF VPDSVQKSFP  180
ATEGESDTIT ATSFSFKAEI FYNQHTNSKV ELKEQISNLE SFLELEPEAA ESVGSVEPEA  240
MDLWLSGDVL ITPHRLVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2293148359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259468.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A1U7ZY530.0A0A1U7ZY53_NELNU; ethylene-responsive transcription factor RAP2-3-like
STRINGXP_010259468.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-42ethylene-responsive element binding protein