PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009260-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 178aa    MW: 19482.2 Da    PI: 8.2353
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009260-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP27.11.4e-081181372
            TCP  3 gkkdrhskihTkvggRdRRvRlsae..caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72
                   +kk    + h kv+  + R+ +s++   aar+F L++  G++ d++ ie  l qak +i+++tgt+++ a++
  NNU_009260-RA 11 VKKPLVNDQHNKVNEQGCRIHMSINyaLAARLFLLTRD-GHKFDGQMIERQLCQAKSSIIDATGTETTIARF 81
                   677777899**************9733579******97.**************************6666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-61783IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
QQITSNGALT VKKPLVNDQH NKVNEQGCRI HMSINYALAA RLFLLTRDGH KFDGQMIERQ  60
LCQAKSSIID ATGTETTIAR FLGTSILASL HQKPKPALLS STPFILGKWI KIEDDADVGR  120
KDDTIIAISA IILDLESHSC TRDGCTNTGH GGGNIVVISG RIVSRATNWK SIDCKDWE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249637.15e-28PREDICTED: transcription factor TCP7
SwissprotQ9FMX28e-22TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1U7Z8A11e-26A0A1U7Z8A1_NELNU; transcription factor TCP7
STRINGXP_010249637.12e-27(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-24TCP family protein