PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009279-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 534aa MW: 58512.9 Da PI: 8.6899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009279-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H NNU_009279-RA 43 FICEICNKGFQRDQNLQLHRRGH 65 89*******************88 PP
2	zf-C2H2	11.1	0.0012	119	141	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + NNU_009279-RA 119 WKCDKCSKKYAVQSDWKAHSKIC 141 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.15E-6	42	65	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	42	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.022	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	43	65	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.5E-5	43	65	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	84	114	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.9E-4	107	140	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.15E-6	114	139	No hit	No description
SMART	SM00355	150	119	139	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MGCEAFLDMR IDEQNNRRLK EKNDPNAEVI ALSPTTLMAT NRFICEICNK GFQRDQNLQL 60 HRRGHNLPWK LRQRTSTEIR KKVYICPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK 120 CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTIFSRRDSF ITHRAFCDAL ADENNKVNQG 180 LVSSFGRSLP GQVSELMSSM PINTTNNASM GISEFNHPHA KNPLKPLAND LMSMPLKSLN 240 MAGGMFSSSA GALLGSPRGI NSSSSCLQLC ANSSSSFDGL NDTKNGRHLV GSAYMSATAL 300 LQKAAQMGAT ASSNINSSVM QKSFLSGMTG TDQLSGLRPS AYGGMQQDNS SYNHIQQQQT 360 DHSQLAAIEG GGFSSQFLQK STQETSSSTQ LFVETTAGVQ SSEMNDMGIF SGMFVGGDQN 420 HGFLKNIEQE NCSSTVMPSQ GRNINLGLEI PPTRLNPAGP SIRFGGNSGG DTMTVDFLGI 480 GGSGLRNLQE QQHQRQQQGL EFEAISQRRL QGLHQLQQQI SHGQAAMEKP MWDV

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MGCEAFLDMR IDEQNNRRLK EKNDPNAEVI ALSPTTLMAT NRFICEICNK GFQRDQNLQL  60
HRRGHNLPWK LRQRTSTEIR KKVYICPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK  120
CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTIFSRRDSF ITHRAFCDAL ADENNKVNQG  180
LVSSFGRSLP GQVSELMSSM PINTTNNASM GISEFNHPHA KNPLKPLAND LMSMPLKSLN  240
MAGGMFSSSA GALLGSPRGI NSSSSCLQLC ANSSSSFDGL NDTKNGRHLV GSAYMSATAL  300
LQKAAQMGAT ASSNINSSVM QKSFLSGMTG TDQLSGLRPS AYGGMQQDNS SYNHIQQQQT  360
DHSQLAAIEG GGFSSQFLQK STQETSSSTQ LFVETTAGVQ SSEMNDMGIF SGMFVGGDQN  420
HGFLKNIEQE NCSSTVMPSQ GRNINLGLEI PPTRLNPAGP SIRFGGNSGG DTMTVDFLGI  480
GGSGLRNLQE QQHQRQQQGL EFEAISQRRL QGLHQLQQQI SHGQAAMEKP MWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	115	178	3	66	Zinc finger protein JACKDAW
5b3h_F	2e-32	115	178	3	66	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	81	KLRQRTSTEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259675.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X1
Swissprot	Q9SCQ6	1e-105	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8AC17	0.0	A0A1U8AC17_NELNU; protein indeterminate-domain 2-like isoform X1
STRING	XP_010259675.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-95	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]