PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009308-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 89aa MW: 10074.6 Da PI: 11.3088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009308-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.6	3.9e-07	38	75	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 E rRRd++ + f L ++P Ka++L A++Y+k+Lq NNU_009308-RA 38 E-RRRDKLSQHFIALSAIVPGF--------KKASVLGDAIKYLKQLQ 75 4.699**************6........4*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-11	33	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.28E-7	34	79	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.8E-11	34	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-9	35	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-5	39	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MPFPSHVSDQ NYVSKPGHGT KRVNPATTRP AQDHVIAERR RDKLSQHFIA LSAIVPGFKK 60 ASVLGDAIKY LKQLQQRVRT LKERAEKKT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271548.1	5e-34	PREDICTED: transcription factor bHLH18-like
Refseq	XP_019055013.1	5e-34	PREDICTED: transcription factor bHLH18-like
Swissprot	Q9T072	1e-17	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A1U8Q8A6	1e-32	A0A1U8Q8A6_NELNU; transcription factor bHLH18-like
STRING	XP_010271548.1	2e-33	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-20	bHLH family protein