PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009360-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 547aa    MW: 60360.1 Da    PI: 6.3643
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009360-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54e-25194247155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+ WtpeLH++F+ a++ L G ekA+Pk+ile+m+ +gL++e+v+SHLQk+R 
  NNU_009360-RA 194 KQRVIWTPELHKKFIAAIHGL-GVEKAVPKKILEVMNEPGLSRENVASHLQKFRN 247
                    79*******************.********************************6 PP
2Response_reg852.2e-28291371109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl vdD+++ +++++ +l++ +y +v+++++++eal+ll+e++  +D++++D+ m +mdG++ll+ i  e  ++p+i+++++++++++ + +k Ga
  NNU_009360-RA  29 VLAVDDDRVCLRVIEAFLRQCRY-NVTVTTEASEALRLLRENKngFDIVITDVHMDDMDGFRLLEIISLEM-DVPVIMMSSNDDKNTVMKGIKHGA 122
                    799********************.***************999999********************998755.9*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                    +d+l Kp+ +ee+ +
  NNU_009360-RA 123 RDYLLKPIRKEEIQN 137
                    ***********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.0E-4125179No hitNo description
SuperFamilySSF521724.41E-3525150IPR011006CheY-like superfamily
SMARTSM004481.1E-2927139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.3928143IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-2529137IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.64E-2830143No hitNo description
Gene3DG3DSA:1.10.10.606.2E-25191251IPR009057Homeodomain-like
PROSITE profilePS5129410.789191250IPR017930Myb domain
SuperFamilySSF466895.38E-17192251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22194247IPR006447Myb domain, plants
PfamPF002493.7E-6199245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MASENCGQLG QLPAPDNGDK ATFPEGMRVL AVDDDRVCLR VIEAFLRQCR YNVTVTTEAS  60
EALRLLRENK NGFDIVITDV HMDDMDGFRL LEIISLEMDV PVIMMSSNDD KNTVMKGIKH  120
GARDYLLKPI RKEEIQNIWQ HVLRKSLSQA NESIVVEGGS DQDSKPIKRQ REQSKDKEDA  180
TSNNSEEDYS SQKKQRVIWT PELHKKFIAA IHGLGVEKAV PKKILEVMNE PGLSRENVAS  240
HLQKFRNALK KNSSRVSQKS NDNMDSDGIG GNSSNTTILS FNGQDQNNVS CFENSGFNSN  300
INSGMIQFGH GSQNTDTFST SLVNPKPLSL PLKQQGTFLH QYPDVPVSRN QMQKIIHMSG  360
LRGVQSNSMK MDMHHLTAFG SLNYKPFSPK PKMLNDHMDI SSQIPSFGSC NELNQIGLSL  420
PGCTSNSHPN SVFFGVSGSP CPILAGASTE QSVLFQHNSS IGQAQTLLPG QSKAGNFTAC  480
NAAEDIEFVR KMTGAPMEMQ CPNMDNFLLG DHAMSMHLCP DCLETDSIFH PSSCSSKDED  540
LSAAIKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22190253164ARR10-B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259819.10.0PREDICTED: two-component response regulator ORR24-like isoform X2
TrEMBLA0A1U8A0Y10.0A0A1U8A0Y1_NELNU; two-component response regulator ORR24-like isoform X2
STRINGXP_010259817.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.15e-89response regulator 10