PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009436-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 250aa    MW: 27613.9 Da    PI: 7.344
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009436-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-211777257
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++R+++tkeq+ +Le+l+++  r+p+ae++++++++l    +++ ++V++WFqN++a++++
  NNU_009436-RA 17 STRWNPTKEQISILESLYRQgIRTPTAEQIQQISSRLrmygHIEGKNVFYWFQNHKARQRQ 77
                   58*****************99**************************************97 PP
2Wus_type_Homeobox117.37.1e-381679265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       a+tRW+Pt+eQi iLe+ly++G+rtP++e+iq+i+++L+ yG+ie+kNVfyWFQN+kaR+rqkq
      NNU_009436-RA 16 ASTRWNPTKEQISILESLYRQGIRTPTAEQIQQISSRLRMYGHIEGKNVFYWFQNHKARQRQKQ 79
                       689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.4021378IPR001356Homeobox domain
SMARTSM003891.6E-71582IPR001356Homeobox domain
SuperFamilySSF466892.57E-131685IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-91877IPR009057Homeodomain-like
PfamPF000466.1E-191877IPR001356Homeobox domain
CDDcd000865.69E-81879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEDKSVELLA SAGSPASTRW NPTKEQISIL ESLYRQGIRT PTAEQIQQIS SRLRMYGHIE  60
GKNVFYWFQN HKARQRQKQK QESMVYANQF FHKAAPVLVH SPRPFVCAPF YMPQTGIGFY  120
PPHPKVLLPG GVKRKPKMDK MEKRKGTGGG GDGVSAGAGY EAAQAGFYNM YKDDDNEGLV  180
GTTDGHHETL TLFPLHPTGV LEDKIENHFP STSAENSNAS TSSGSNSVEV VSADQPLIDF  240
FAENGSVESY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260182.11e-173PREDICTED: WUSCHEL-related homeobox 2
TrEMBLA0A1U8A1U91e-172A0A1U8A1U9_NELNU; WUSCHEL-related homeobox 2
STRINGXP_010260182.11e-173(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-43WUSCHEL related homeobox 2