PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009452-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 269aa    MW: 31168.7 Da    PI: 9.2321
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009452-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-2075135257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    ++R+++t+eq+ +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  NNU_009452-RA  75 STRWCPTPEQIMILEEMYRGgIRTPNATQIQQITAHLsfygKIEGKNVFYWFQNHKARERQ 135
                    58*****************99**************************************97 PP
2Wus_type_Homeobox1222.5e-3974136264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a+tRW+PtpeQi+iLee+y+ G+rtPn+ +iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
      NNU_009452-RA  74 ASTRWCPTPEQIMILEEMYRGGIRTPNATQIQQITAHLSFYGKIEGKNVFYWFQNHKARERQK 136
                        689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.96171136IPR001356Homeobox domain
SMARTSM003894.9E-473140IPR001356Homeobox domain
SuperFamilySSF466898.98E-1176136IPR009057Homeodomain-like
PfamPF000462.3E-1876135IPR001356Homeobox domain
CDDcd000860.0011576136No hitNo description
Gene3DG3DSA:1.10.10.605.5E-777135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPHWGEHQHD KRGSTSAYNY PFASLPLHPF CLSFSSPLSS LSLSIVYISL YIHLCIHIST  60
DSKRKCWKKM SPAASTRWCP TPEQIMILEE MYRGGIRTPN ATQIQQITAH LSFYGKIEGK  120
NVFYWFQNHK ARERQKLRRK LCRQQQQQLS AHHHRFLHQI EQSDSSALHQ PPLYNSAQLL  180
PQAGGAKEAS NDVMSYSSRK MDIPERDEKE RSKWMYGRDW MMMMMMDIGP TTHCCNRPLK  240
TLQLFPITTT SLKDECTTSN HLSCSTSTD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259966.10.0PREDICTED: WUSCHEL-related homeobox 3-like
SwissprotQ9SIB41e-48WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A1U8ADW10.0A0A1U8ADW1_NELNU; WUSCHEL-related homeobox 3-like
STRINGXP_010259966.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-40WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]