PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009514-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 170aa    MW: 18820.9 Da    PI: 8.7181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009514-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00143961123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  NNU_009514-RA 39 FECKTCNRQFPSFQALGGHRASH 61
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.94E-937112No hitNo description
PfamPF139122.7E-133863IPR007087Zinc finger, C2H2
SMARTSM003550.163961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8273966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139124.6E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS501578.93390112IPR007087Zinc finger, C2H2
SMARTSM003550.5890112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKRSRVEGEI DSITMANCLM LLSRGAENDS MAYFPSRVFE CKTCNRQFPS FQALGGHRAS  60
HKKPRLMMTG EDTADHQAQL QSLQMKPKTH ECSVCGLEFA IGQALGGHMR RHRAGLSEGL  120
SLPPPPPVPV LKRSSSSRRV LCLDLNLTPL ENDLDLQLGR KIPPVVDCLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260064.11e-123PREDICTED: zinc finger protein ZAT12
TrEMBLA0A1U8A5B41e-122A0A1U8A5B4_NELNU; zinc finger protein ZAT12
STRINGXP_010260064.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-37C2H2 family protein