PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009569-RA
Common NameLOC104599345
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 292aa    MW: 31988.2 Da    PI: 6.399
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009569-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17176225155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  NNU_009569-RA 176 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 225
                    78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-16176234IPR016177DNA-binding domain
PfamPF008472.7E-9176225IPR001471AP2/ERF domain
CDDcd000189.32E-12177235No hitNo description
SMARTSM003801.3E-32177239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17177234IPR001471AP2/ERF domain
PROSITE profilePS5103217.794177233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLDLNVVSAD STCNEDEMMM DKLPDGSGGQ MDDSGTSNSS VVNADASSNG GDEDSCSTPD  60
RRCGGGDMFA FSFDILKKGT TADDDDVESG NGNPTMPTGF VTRQLFPVAA DGEHGVGVGD  120
GGLRSGPSSA SSSRPHWVDF SFCSPDGGGQ PEMVMQQQQQ QQHVKKSRRG PRSRSSQYRG  180
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEED  240
LKQMRNLTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6223920.0AB622392.1 Nelumbo nucifera mRNA for APETALA2 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260156.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_010260158.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK039e-86RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U7ZZW50.0A0A1U7ZZW5_NELNU; ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A1U8AD890.0A0A1U8AD89_NELNU; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_010260155.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-75related to AP2.7