 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | NNU_009651-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
| Family | ZF-HD | ||||||||
| Protein Properties | Length: 142aa MW: 15581.8 Da PI: 4.1423 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 71.6 | 1.2e-22 | 9 | 57 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
Y+eC++NhAaslG++a+DGCgE +++ t+ +l C ACgCH nFH +
NNU_009651-RA 9 AYRECRHNHAASLGSYATDGCGELTTD----ETTPGLMCEACGCHHNFHQKVI 57
7***********************998....35689*************9986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 2.7E-18 | 9 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 20.547 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 2.0E-13 | 10 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 6.3E-19 | 10 | 55 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 142 aa Download sequence Send to blast |
MEGDNINDAY RECRHNHAAS LGSYATDGCG ELTTDETTPG LMCEACGCHH NFHQKVIVLE 60 KEGGRGGSNT NQNHIDNNRV WDAVVVEIMD LWTTQVSSAL ETADFDISSA SDTGKFNTND 120 ERNESVIALD VLALFDRSDE QT |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010243781.1 | 3e-31 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
| TrEMBL | A0A1U7YZW6 | 6e-30 | A0A1U7YZW6_NELNU; zinc-finger homeodomain protein 1-like | ||||
| STRING | XP_010271248.1 | 4e-32 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60480.1 | 1e-15 | homeobox protein 26 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|