PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009675-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 172aa MW: 19728.5 Da PI: 9.4105

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009675-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	14	69	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r++ ++t+eq++ Le+ F++++++ e + +LA+ lgL rqV +W+qN+Ra++k NNU_009675-RA 14 KRSKKRLTQEQVRLLESSFNNEKKLEPEIKMQLARDLGLHPRQVAIWYQNKRARWK 69 688999*************************************************9 PP
2	HD-ZIP_I/II	111.6	5e-36	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl++eqv+lLE+sF++e+kLepe K++lar+Lgl+prqva+W+qn+RAR+kt+ lE dy+aL+ ++++ ++++rLe+e+++Lreel++ NNU_009675-RA 16 SKKRLTQEQVRLLESSFNNEKKLEPEIKMQLARDLGLHPRQVAIWYQNKRARWKTQTLELDYKALQLKLENALADKRRLEREMAKLREELEK 107 69***************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.827	11	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.06E-17	12	79	IPR009057	Homeodomain-like
SMART	SM00389	1.4E-16	13	75	IPR001356	Homeobox domain
CDD	cd00086	1.17E-13	14	71	No hit	No description
Pfam	PF00046	5.3E-16	14	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-19	15	78	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDLFQSESQK QPPKRSKKRL TQEQVRLLES SFNNEKKLEP EIKMQLARDL GLHPRQVAIW 60 YQNKRARWKT QTLELDYKAL QLKLENALAD KRRLEREMAK LREELEKVQG MLLGGSNSTP 120 PALTSISNSC DEDGTSSLPS NSYWEKSGAL QVEELYACLM GGDAQSSKLK WS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	PKRSKKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260339.1	1e-123	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1U8AET5	1e-121	A0A1U8AET5_NELNU; homeobox-leucine zipper protein ATHB-52-like
STRING	XP_010260339.1	1e-122	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-39	homeobox protein 52