PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009711-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WOX

Protein Properties

Length: 353aa MW: 38639.5 Da PI: 7.4757

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009711-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.9	1.3e-06	80	98	39	57
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNr+ + k+ NNU_009711-RA 80 VGDANVFYWFQNRKSRSKH 98 6789************995 PP
2	Wus_type_Homeobox	44.1	4.8e-15	75	100	40	65
Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqkq 65 eyG+++d+NVfyWFQNrk+R+++kq NNU_009711-RA 75 PEYGQVGDANVFYWFQNRKSRSKHKQ 100 58**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNTH HQWQHDINPS LMSTPCQRTP YAPVLYDHNP ICCCLFLTCL 60 LLGLLVARQN CLLIPEYGQV GDANVFYWFQ NRKSRSKHKQ RHLQSAKSQA QTAPVTTSPA 120 PAPAVAVQAS SSSSSSEKSP PRRTDKPLPA GGDNVIEASN SPTTSVNQTY FQPQLHVDFN 180 PEPFFFPVQS PSFSQGFCFS ELSNVVQIPD QLTNPCPDSL LLNDLINQGA PKKDDQVKMK 240 LNQQLSSYTT ITTAPVTTTT TGYTTALNQI QGVGESGGNG MIPAAAVKST VFINDVAFEV 300 AVGPLNVREA FGDDAILVNS SGQPVLTNEW GVTLQSLQHG AFYYLWRTYS HCS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNTH HQWQHDINPS LMSTPCQRTP YAPVLYDHNP ICCCLFLTCL  60
LLGLLVARQN CLLIPEYGQV GDANVFYWFQ NRKSRSKHKQ RHLQSAKSQA QTAPVTTSPA  120
PAPAVAVQAS SSSSSSEKSP PRRTDKPLPA GGDNVIEASN SPTTSVNQTY FQPQLHVDFN  180
PEPFFFPVQS PSFSQGFCFS ELSNVVQIPD QLTNPCPDSL LLNDLINQGA PKKDDQVKMK  240
LNQQLSSYTT ITTAPVTTTT TGYTTALNQI QGVGESGGNG MIPAAAVKST VFINDVAFEV  300
AVGPLNVREA FGDDAILVNS SGQPVLTNEW GVTLQSLQHG AFYYLWRTYS HCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260387.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A0A1U8A2D8	0.0	A0A1U8A2D8_NELNU; WUSCHEL-related homeobox 9-like
STRING	XP_010260387.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-21	homeobox-3