PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009718-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 279aa    MW: 31086.7 Da    PI: 4.6594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009718-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-20119170256
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                    +++GVr ++ +gr++AeIrd      k  r++lg+f+taeeAa a+++a+++++g+
  NNU_009718-RA 119 HFRGVRKRP-WGRYAAEIRDS---SrKGVRVWLGTFDTAEEAALAYDKAALRMRGP 170
                    69*******.**********3...2234**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-31118178IPR001471AP2/ERF domain
CDDcd000185.22E-30119177No hitNo description
PfamPF008471.4E-14119169IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23119178IPR016177DNA-binding domain
SMARTSM003802.8E-37119183IPR001471AP2/ERF domain
PROSITE profilePS5103223.406119177IPR001471AP2/ERF domain
PRINTSPR003672.2E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.2E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAIGLEHCTS PDGLLENVWA NFIAGTAPGE GGTSNTPTLS QTWEDPSNLN GKDGSMELLQ  60
RLPSLGRWVS MGAETWEELL NGIIPASNIE PSGNLDSECS ESSSASKPNA ARVEVVTRHF  120
RGVRKRPWGR YAAEIRDSSR KGVRVWLGTF DTAEEAALAY DKAALRMRGP RAYLNFPLKM  180
VAEAMEDRHS GQDFNCTSEY SQECFATELN HSLFPSHGCI EKTLNPRKRS NRDWDYNDEM  240
MIKAPAWKTQ PSVEEKLGNE SDILEFQDLG SDYLDSMLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28118180163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260392.10.0PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A1U8A2E50.0A0A1U8A2E5_NELNU; ethylene-responsive transcription factor ERF091
STRINGXP_010260392.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-32ERF family protein