PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009875-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 191aa    MW: 20946.7 Da    PI: 6.5184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009875-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.0001956921555
                   HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +i ++   L++l+P +    +k   Ka +L + ++Y++sLq
  NNU_009875-RA 56 KISERVRYLQDLVPGC----NKITGKAVMLDQIINYVQSLQ 92
                   78888888*******9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0174191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-45596No hitNo description
Gene3DG3DSA:4.10.280.106.2E-1155108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1055107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGEQPSPNGK KRKRVPESHS QLDPRQSEIE PQRDASQETL VSLKEQNAGT NSHLEKISER  60
VRYLQDLVPG CNKITGKAVM LDQIINYVQS LQRQVEFLSV KLATVNPEIN IDIEQVLSKY  120
KFFICGGGSS GILGFTPAMS SSHPQHITPP EGAFLVPSAR EDELQSALQL GFVPNPAVNN  180
LGQNGSMKAE P
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248338.15e-85PREDICTED: transcription factor bHLH74-like isoform X5
SwissprotQ6NKN97e-37BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A1U7Z7F51e-83A0A1U7Z7F5_NELNU; transcription factor bHLH74-like isoform X5
STRINGXP_010248334.15e-79(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]