PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009993-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 512aa    MW: 56454 Da    PI: 7.2427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009993-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.2e-11199223226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C +++ t tCk+Gd+CkF H+
  NNU_009993-RA 199 GEKDCAHYMLTRTCKFGDSCKFDHP 223
                    7889********************9 PP
2zf-CCCH283.7e-09250276127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C++f++t  Ck+G rCkF+H++
  NNU_009993-RA 250 PGEPDCPYFLKTQKCKFGFRCKFNHPK 276
                    5789*********************96 PP
3zf-CCCH37.15.2e-12296320327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C f+++tG Ck+G++CkF+H++
  NNU_009993-RA 296 EPTCAFYMKTGKCKFGASCKFHHPK 320
                    689********************96 PP
4zf-CCCH38.51.9e-12374399126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C+f+++tG CkyG++C+++H+
  NNU_009993-RA 374 PGEVDCPFYLKTGSCKYGATCRYNHP 399
                    57899********************9 PP
5zf-CCCH41.62.1e-13446469326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    + +C+++++tG+Ck+G+rCkF+H+
  NNU_009993-RA 446 QIECDYYMKTGECKFGERCKFHHP 469
                    568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.544197225IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4197224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5198224IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8199223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4203222IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164249277IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5254279IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45293321IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9296320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6297321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5299319IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7373400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432373401IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10375399IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5377401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4379398IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6443470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366443471IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6445472IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-11447469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5449469IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MANQIYGYNP SYGGTGLSTV YPSRLTPGSV TDPYLSDSSL VGSSRYLSSD HLSTTDSSKY  60
SVIDRGSSMF LNQNDALRFS GSDIGGIGGA GGFSTSRISG GIGTAAAAST PPLLSQATWP  120
GVDVGAAVDP VVSGVKRSTE DVYCAWLVVV IVVALYHQNV LGTHNTIGQS EALFSMNSFV  180
KRPRFESASN LPIYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPLWVPEGG IPDWKEVPLI  240
ATSESLPERP GEPDCPYFLK TQKCKFGFRC KFNHPKDKID SLVGSEAVEL PERPSEPTCA  300
FYMKTGKCKF GASCKFHHPK DIQIPVSGQE NGNGEETETV TINDETMAAD VNLKPFVPFT  360
PALLHNSKGL PIRPGEVDCP FYLKTGSCKY GATCRYNHPD RNVCSLDICL LNLLWHIDLE  420
SMIYSFYVFP LQLGLGPTIY PQRPGQIECD YYMKTGECKF GERCKFHHPI DRSAPMTKQA  480
QQQNVKLTLA GLPRREDMER KRNLEPKTQE TR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-58LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-58LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-161C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1U8A3F10.0A0A1U8A3F1_NELNU; zinc finger CCCH domain-containing protein 37 isoform X1
STRINGXP_010260864.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-155floral homeotic protein (HUA1)