PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010073-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 423aa    MW: 45596.9 Da    PI: 5.4861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010073-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20206255255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  NNU_010073-RA 206 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 255
                    7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-22206264IPR016177DNA-binding domain
PfamPF008473.7E-14206255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-33206264IPR001471AP2/ERF domain
PROSITE profilePS5103225.712206263IPR001471AP2/ERF domain
SMARTSM003801.2E-37206269IPR001471AP2/ERF domain
PRINTSPR003671.2E-11207218IPR001471AP2/ERF domain
CDDcd000184.43E-15214265No hitNo description
PRINTSPR003671.2E-11229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MCELKVANPR DTDEFARFPA GFDVGDTDEG FSQAPPAPSV TQHEGIVLQG YSGPMFSGYS  60
RAREMSAMVS ALTHVVSGER SGGEWAYQPD FSGSVASTIA SGATTYASGS PSSSYTSSSS  120
MSGGGQKRGR DEESTGQLPE SVLRMYRGFG EFRTSLGESS SVLPVKQEGS SIISTTTVGT  180
PSTTTTTAAA RDETTSQGEV GERRRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFDTAE  240
AAARAYDEAA LRFRGNRAKL NFPENVRLSQ SLSNPAATQL TISHSPATLL PVPQISEPFM  300
PPQTQQQLQS SDIARDYYEY SQLLQSSGEF QRQPTSLLEQ MFYSSSLAAS LRPSSSSSSS  360
SPLASSVSSS MLSNPFPLFY TDQQMEYLRQ MDTRGQGNTS GGGSEFPTPS WTDSGHYPSS  420
SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22205266163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261002.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U8AGB40.0A0A1U8AGB4_NELNU; ethylene-responsive transcription factor ABR1-like
STRINGXP_010261002.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-16ethylene response factor 110