PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010111-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YC
Protein Properties Length: 140aa    MW: 15649.1 Da    PI: 9.6809
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010111-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.81.3e-146941198
          NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                   e++t+  + ++Pl r+kki+k d+++k++ +ea  l+s + +lf+  l+ +s   a e+kr+ +k   +  av++ + + dfl+d  p 
  NNU_010111-RA  6 EENTETLQPAFPLGRVKKIMKLDNEIKKVNSEALLLVSLSTDLFLRFLAEKSAGVAVEKKRKIVKLEHLRIAVKKHEpTKDFLLDSLPM 94
                   6778888999***************************************************************9875389*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-18879IPR009072Histone-fold
SuperFamilySSF471132.68E-161193IPR009072Histone-fold
PfamPF008086.0E-161678IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADAEEENTE TLQPAFPLGR VKKIMKLDNE IKKVNSEALL LVSLSTDLFL RFLAEKSAGV  60
AVEKKRKIVK LEHLRIAVKK HEPTKDFLLD SLPMPSQVST RPSTAESRPK PTVEKAVPAG  120
THRIDDFFHK CSNGISNQTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261048.13e-98PREDICTED: chromatin accessibility complex protein 1
TrEMBLA0A1U8A3V68e-97A0A1U8A3V6_NELNU; chromatin accessibility complex protein 1
STRINGXP_010261048.11e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-40nuclear factor Y, subunit C13