PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010128-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 128aa MW: 14552.7 Da PI: 9.6239

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010128-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5e-31	42	100	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YYrC+s gC+vkk+ver++ed ++v++tYeg Hnhe NNU_010128-RA 42 MDDGFKWRKYGKKTVKNSPNPRNYYRCSSGGCNVKKRVERDREDSSYVITTYEGVHNHE 100 69********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-33	30	102	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-28	34	102	IPR003657	WRKY domain
PROSITE profile	PS50811	31.364	37	102	IPR003657	WRKY domain
SMART	SM00774	8.0E-35	42	101	IPR003657	WRKY domain
Pfam	PF03106	9.1E-25	43	100	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MIFTLLVVCS CGCRKCKGGL KKIKTDAGFR IAFRTKSELE IMDDGFKWRK YGKKTVKNSP 60 NPRNYYRCSS GGCNVKKRVE RDREDSSYVI TTYEGVHNHE SPCVVYYNEM PLMVPSGWTL 120 QASNSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-26	30	102	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261070.1	1e-80	PREDICTED: probable WRKY transcription factor 51 isoform X1
Refseq	XP_019053770.1	7e-81	PREDICTED: probable WRKY transcription factor 51 isoform X2
Swissprot	Q93WU9	2e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1U8A7M3	3e-79	A0A1U8A7M3_NELNU; probable WRKY transcription factor 51 isoform X1
TrEMBL	A0A1U8Q6S7	2e-79	A0A1U8Q6S7_NELNU; probable WRKY transcription factor 51 isoform X2
STRING	XP_010261070.1	5e-80	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-45	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]