PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010136-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 363aa    MW: 39738.7 Da    PI: 9.789
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010136-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.7e-13223249127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ykte+Cr +  tG C+yG++C+FaHg+
  NNU_010136-RA 223 YKTEICRAWEDTGNCRYGSKCQFAHGK 249
                    9************************96 PP
2zf-CCCH29.41.3e-09267287526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    lC+ fa  GtC yG++C+F+H 
  NNU_010136-RA 267 LCKSFAT-GTCAYGSKCRFIHH 287
                    9******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18220254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-10221253IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-9222249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.962222250IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10223249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864262289IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-6263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5263287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-7266287IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6267287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRSSSPSFFL VQKSKRPSGF GRQQTVSIRI PFGAEAKKLP LVVWHRRSEI EEKKRKAHMH  60
GFYNNNNVKV TGSGGRSSIS PQSDDQLILG RRGRYGFTSS AFDPQIHNPL DVDSTLIRYS  120
RATGASLSPS ADVFPSQIID STKFHPLLLH RSNISPRGSS PSPLSSIENL ETPPSKSPPV  180
FATPVKVEED VLVMDGILVG SVPGGRTRSG PDSGSSSSGN SLYKTEICRA WEDTGNCRYG  240
SKCQFAHGKE ELRPTRVSSK NKSEGQLCKS FATGTCAYGS KCRFIHHMAV SSPSRTATSA  300
GATTMIKPEQ DDWSPADDGI EVRLPSSTEH CPTREDVNLY IHDVLYGPSR RKRLPVFAEI  360
CPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-16214286172Tristetraproline
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261083.10.0PREDICTED: uncharacterized protein LOC104599994
RefseqXP_010261084.10.0PREDICTED: uncharacterized protein LOC104599994
TrEMBLA0A1U8AFE70.0A0A1U8AFE7_NELNU; uncharacterized protein LOC104599994
STRINGXP_010261083.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-14C3H family protein