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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_010293-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 233aa MW: 25774.9 Da PI: 4.4585 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.1 | 9.5e-09 | 14 | 36 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
W+ Ia++++ gRt++++k++w+++
NNU_010293-RA 14 WAHIASHLP-GRTDNEIKNYWNSW 36
*********.************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 11.871 | 1 | 41 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 7.41E-8 | 5 | 44 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 12 | 37 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 5.30E-7 | 14 | 37 | No hit | No description |
| Pfam | PF00249 | 9.1E-7 | 14 | 36 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 233 aa Download sequence Send to blast |
MIIYVGYVIQ SNMWAHIASH LPGRTDNEIK NYWNSWIKKK IRKPTTPRAM APSSVEFVQS 60 GYGLNQIGLV NQDLSTKPPV EDGLFSSSCP IFMFDIGTVD GLSSGNARVD IFHESAGLNS 120 DSWHQNYSTH EVQAIPPPPP SFTSGMESNY LPPLIENVET MVPMEDQACS MNENGEIGLE 180 CLQRQESSEW VDSHQYPGFL IWDHVEAQMC GDGVVPAASA NLGHILSSYP QSL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010261333.1 | 1e-164 | PREDICTED: transcription repressor MYB4 | ||||
| TrEMBL | A0A1U8AH23 | 1e-162 | A0A1U8AH23_NELNU; transcription repressor MYB4 | ||||
| STRING | XP_010261333.1 | 1e-163 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G63910.1 | 1e-25 | myb domain protein 103 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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