PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010326-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 196aa MW: 22164.2 Da PI: 9.8078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010326-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.5	2.7e-33	119	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ NNU_010326-RA 119 LDDGYRWRKYGQKAVKNSNFPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 177 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-34	105	177	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-29	111	178	IPR003657	WRKY domain
PROSITE profile	PS50811	28.736	114	179	IPR003657	WRKY domain
SMART	SM00774	6.9E-39	119	178	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	120	177	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEGEAPPLLP PLSSHNNPSY ILTPSLASTS LHPPLLYQPY NLLQGSNILP DIDWVSLLSS 60 PFGFGDLQKP LLSNADVTTR TGNKAEDEKS GKDKVKSSRM KKASRPRFAF QTRSTEDILD 120 DGYRWRKYGQ KAVKNSNFPR SYYRCTHHTC NVKKQVQRLS KDTSIVVTTY EGIHNHPCEK 180 LMESLSPLLK QIQFLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	109	176	7	74	Probable WRKY transcription factor 4
2lex_A	1e-24	109	176	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261390.1	1e-145	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8GY11	8e-55	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A1U8A2W7	1e-144	A0A1U8A2W7_NELNU; probable WRKY transcription factor 43
STRING	XP_010261390.1	1e-144	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	2e-57	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]