PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010390-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 339aa    MW: 37900 Da    PI: 5.1701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010390-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19131181155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  NNU_010390-RA 131 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 181
                    59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.42E-32131188No hitNo description
Gene3DG3DSA:3.30.730.108.8E-30132189IPR001471AP2/ERF domain
PROSITE profilePS5103223.433132189IPR001471AP2/ERF domain
PfamPF008471.1E-12132181IPR001471AP2/ERF domain
SMARTSM003807.1E-37132195IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21132189IPR016177DNA-binding domain
PRINTSPR003673.6E-10133144IPR001471AP2/ERF domain
PRINTSPR003673.6E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDQNFFCPIK YSEHRHLTKK FVKPSVRPKN VAACRNPSEV NVIGGPKVVR ISVTDADATD  60
SSSDEDELFS RHRVKRYVSE ISIEPCSTDN CNVNGSWRSR SVRNGRKKSG GGVIDTSVNR  120
RAVKLNSTNV KKFRGVRQRP WGKWAAEIRD PARRVRLWLG TYDTAEEAAM VYDNAAIQLR  180
GPDAMTNFVT PAKAKQETQV PTSSGYDSGE ESHNLSSPTS VLRFRSPANE ESESQIRQEA  240
VPQQPAKEVQ YETSLPNGFG EFSPLDIPFL DEFLEFKTPS TELFDETSFV DSFFRDDFGD  300
IFLGSCGDFG SSSSSSTWQV DDYFQEIGDL FASDPLAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20131188159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261483.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1U8A4Z60.0A0A1U8A4Z6_NELNU; ethylene-responsive transcription factor CRF1-like
STRINGXP_010261483.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-54cytokinin response factor 4