PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010416-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 362aa    MW: 40543.9 Da    PI: 6.7028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010416-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.8e-28125186159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +dDgy+WrKYGqK++ g+++pr+YYrC+++   gC + k+v+rs+edp+v++itY+g+H+++
  NNU_010416-RA 125 VDDGYSWRKYGQKDILGAKHPRGYYRCAYRnlqGCLAIKQVQRSDEDPSVFHITYRGKHTCN 186
                    59***************************98989**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-28116187IPR003657WRKY domain
SuperFamilySSF1182902.62E-25124187IPR003657WRKY domain
SMARTSM007742.1E-39125187IPR003657WRKY domain
PfamPF031062.1E-26126185IPR003657WRKY domain
PROSITE profilePS5081122.848126188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEKVGEWDKN GLLNELMQGR EIARQLHILL DPSSSAEKRQ FLVQKAQSCF ERALAILKWN  60
GVVETKPQSV GIVAAMSDSP RSDSGSHRSN DSDQERRDMS KKRKMEPRWT EQVRVCSGTR  120
LEGPVDDGYS WRKYGQKDIL GAKHPRGYYR CAYRNLQGCL AIKQVQRSDE DPSVFHITYR  180
GKHTCNQASH LVPASASSEK PEPKQNQQHH LHQPQQQQPN PQNHSQGILN FRTGLKVQTE  240
DLDNGELISS SFSFPSETIG FGFATTEDHI FSPSTLDNNF VGSFSPPFIS PTTSESNYFP  300
VSPFRVNGLG GGHNFHTSES DLTRLISAAT STTSSPIMDL DFSLDPADFD TNFPLDSPGF  360
FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-191251831474Disease resistance protein RRS1
5w3x_D8e-191251831474Disease resistance protein RRS1
6ir8_A5e-19125185868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261512.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U8A8S10.0A0A1U8A8S1_NELNU; probable WRKY transcription factor 41
STRINGXP_010261512.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-53WRKY family protein