PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010434-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 323aa    MW: 35041.3 Da    PI: 8.6347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010434-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19114164256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  NNU_010434-RA 114 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 164
                    59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.86E-17113173No hitNo description
PROSITE profilePS5103223.301114171IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22114172IPR016177DNA-binding domain
SMARTSM003802.6E-34114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-31114172IPR001471AP2/ERF domain
PRINTSPR003674.1E-10115126IPR001471AP2/ERF domain
PfamPF008473.2E-13115164IPR001471AP2/ERF domain
PRINTSPR003674.1E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDRALETGAP ISFSCGIDIR TCLSELLISG GANPLDSIFS ACPPTYSNPL TRETQEPLGS  60
SVYLRQGELL QKFSNKSKAT STTKVSPGAL MTPQRNQDGT YSSPSMTTLC KKKLYRGVRQ  120
RHWGKWVAEI RLPQNRMRVW LGTYDTAEAA AYAYDRAAYK LRGEYARLNF PHLKDGITSG  180
FGDSAKLNAL RSSVDAKIQA IYQKMRRDKA KRNASDNRSS SWGISSNGGT ATASSSCSDG  240
SEGGKVVNSS SILSSSSAIP RDEWGNDILS PTVSEESLSK GAKSPASVST ECPMVTEGLD  300
FEGCSLERMP SFDPELIWEV LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19113171160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19111171263ATERF1
3gcc_A1e-19111171263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211MRRDKAKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261539.10.0PREDICTED: ethylene-responsive transcription factor ERF061
TrEMBLA0A1U8AGL40.0A0A1U8AGL4_NELNU; ethylene-responsive transcription factor ERF061
STRINGXP_010261539.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-50ERF family protein