PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010493-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family BBR-BPC
Protein Properties Length: 321aa    MW: 34539.7 Da    PI: 10.2139
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010493-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind236.51.9e-72124274142292
      GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtt 237
                    +++++++ + k+++    k+ + k++kkk+++s+ ++kk+++ +++k+ekk++d+v+ g +lD s++P+P+CsCtG+ rqCY+WG+GGWqS+CCtt
  NNU_010493-RA 124 TKIRKQQPSAKKANRVASKALRPKQPKKKPSVSTTTKKKNNSMSTAKHEKKNLDIVIGGATLDFSRIPAPICSCTGVARQCYRWGAGGWQSSCCTT 219
                    33444444444555556778888889999999988888888889**************************************************** PP

      GAGA_bind 238 tiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
                    +iS yPLP+s+kr+gaR+agrKmS+ga+ klL++LaaeG+dls+pvDLkdhWA+H
  NNU_010493-RA 220 NISEYPLPMSSKRPGARMAGRKMSNGAYAKLLQRLAAEGHDLSHPVDLKDHWARH 274
                    ******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.4E-761274IPR010409GAGA-binding transcriptional activator
PfamPF062175.5E-711274IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDEKGGLGIR NWDFSEQSVG VDAVLKPVSG VPVPSGTSGH QAAFLKMGAY ANRNSMVPQA  60
DTGASTMEYG GHCWVHPRNF LPPNKANPSL QATPLNTETG LPVVPTGLGV PTDGHNNEFG  120
SKSTKIRKQQ PSAKKANRVA SKALRPKQPK KKPSVSTTTK KKNNSMSTAK HEKKNLDIVI  180
GGATLDFSRI PAPICSCTGV ARQCYRWGAG GWQSSCCTTN ISEYPLPMSS KRPGARMAGR  240
KMSNGAYAKL LQRLAAEGHD LSHPVDLKDH WARHDMGIWL LLIPETSYSS IHLLVPDLLY  300
HLMGHCSVLQ SLGCPAAKIV A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261624.10.0PREDICTED: protein BASIC PENTACYSTEINE7-like isoform X2
TrEMBLA0A1U8AGT50.0A0A1U8AGT5_NELNU; protein BASIC PENTACYSTEINE7-like isoform X2
STRINGXP_010261623.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.44e-54basic pentacysteine 7