PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010532-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 376aa    MW: 42035.6 Da    PI: 4.5514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010532-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19109158255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  NNU_010532-RA 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 158
                    69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-37109172IPR001471AP2/ERF domain
PROSITE profilePS5103224.092109166IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-22109167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-32109168IPR001471AP2/ERF domain
CDDcd000182.14E-33109167No hitNo description
PRINTSPR003671.1E-11110121IPR001471AP2/ERF domain
PfamPF008478.4E-12110158IPR001471AP2/ERF domain
PRINTSPR003671.1E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MCGGAIISDF IPTNRSRRLT ADYLWPDLKQ NSANYYSKPL RPAVVDVDDD FEADFQEFKD  60
EIDEEEGEDV KPFTLASKSG FSRGGSTTLK PVQFSGPAEK SAKRKRKNQY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEEAH PTAPKRTANP  180
SIEKPLPRPN LVSVKQSFSF MNNADSDFYD NSGFMEEKAP IKVSEYLNSI PIVEDQISFK  240
SFSPSDGTTM CFNSDQGSNS FDCSDFGWGE CEPKTPEISS VLSSTMESDG SEFVEDANPK  300
KKLKTKSEEA VPNEGNAPKN LSEELPAFEF QIPYLEGSWD ASVDSFLSSE TTQDCGSSMD  360
LWSFDDLLPP IMGNVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21109166260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304PKKKLKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4622153e-56EF462215.1 Medicago sativa subsp. falcata ethylene-responsive element binding protein (EREBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261706.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12
RefseqXP_010261707.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A1U8A3N90.0A0A1U8A3N9_NELNU; ethylene-responsive transcription factor RAP2-12
STRINGXP_010261706.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-71related to AP2 12