PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010625-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 156aa    MW: 18051.7 Da    PI: 9.4353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010625-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75.1e-144771899
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +p  f++    +k e+ + +l+++ g++W+vkl  ++ +    +++GW++F++ ++L++gDf+vF++ g   f   v vf++
  NNU_010625-RA  4 MPAAFLRYLTADKCEKGEAVLRSRLGETWRVKL--NGLR----FQQGWEDFARHHDLRVGDFLVFRHGGGLVF--DVLVFDT 77
                   677777444444445569***************..5555....9**********************7654444..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.5E-4178IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253178IPR003340B3 DNA binding domain
CDDcd100171.32E-15376No hitNo description
Gene3DG3DSA:2.40.330.101.6E-16380IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-11368IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-17485IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQSMPAAFLR YLTADKCEKG EAVLRSRLGE TWRVKLNGLR FQQGWEDFAR HHDLRVGDFL  60
VFRHGGGLVF DVLVFDTSMC EREYPLLSHV KQEDHTDEEM EETRMKEEAA KDIQSKQKAT  120
RIPISSKAQK KIAYSATKHP FFVAKVTPYS LKKQMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053847.11e-109PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U8Q5H21e-108A0A1U8Q5H2_NELNU; B3 domain-containing protein REM10-like
STRINGXP_010261889.11e-112(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-18B3 family protein