PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010645-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 680aa    MW: 75098.6 Da    PI: 7.1336
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010645-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.9e-12343399155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  NNU_010645-RA 343 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDNEEKAARAYDLAALKYWG 399
                    78*******************433.44555535555.779999**************98 PP
2AP247.83.6e-15442493155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  NNU_010645-RA 442 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 493
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-18343409No hitNo description
PfamPF008476.3E-9343399IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14343409IPR016177DNA-binding domain
PROSITE profilePS5103217.504344407IPR001471AP2/ERF domain
SMARTSM003808.3E-23344413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-12344408IPR001471AP2/ERF domain
PRINTSPR003671.8E-6345356IPR001471AP2/ERF domain
PfamPF008477.3E-10442493IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17442503IPR016177DNA-binding domain
CDDcd000184.83E-25442503No hitNo description
PROSITE profilePS5103219.006443501IPR001471AP2/ERF domain
SMARTSM003802.6E-34443507IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18443501IPR001471AP2/ERF domain
PRINTSPR003671.8E-6483503IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MVQCQAKHQS MHSVPICVSL NFPVAVLPSV PLSGQVEIVD FAPWFCHLLL GGNGGWVPSI  60
FHYQRPDQIG WTGLDQIDSP EVGKKKMSNW LGFSLTPHPR IGEGFGGDGG FSSHLPVMPL  120
RSDGSLCVMD PFSRSHGGDW RYESAMATAT NSQREGPKLE DFLGGYSNSS QENSNVYYQN  180
QQVFHQRDQN PNNGCRINVN VPPAFNSNGE REIEENLTDQ SSLIQSLHYN ENPQTILPTV  240
HLQTADPNPS NSPYHVQLDS ATSIAGFKSW LRQTSFSGEK SSTEANNRNF QSLSLSMNPS  300
SQTGVTAVSP PPASDSRKRP VGKAATREPV PRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH  360
LWDNSCRKEG QTRKGRQGGY DNEEKAARAY DLAALKYWGP TTHINFPLSS YEKELEEMKN  420
MTRQEFVAHL RRKSSGFSRG ASVYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  480
AEAYDIAAIK FRGTSAVTNF DISKYDVKRI CSSTTLITGD LAKRSPKDST PPVPDENNSG  540
ASSSPHQPPP AITNGEPSDE FGDMVWTNTN TDEQHHHQQN VNANDSVSLV SSMSNPNSSN  600
PQSPKEIVTS RNDYGGAGGD FSQSQTTFFS LNNSKYENGT NCSEQSTSNG GGDNVNWVVA  660
GRPANLSMVH QLPMFALWNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261924.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-133AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U8A6190.0A0A1U8A619_NELNU; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_010261924.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-131AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]