PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010680-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YA
Protein Properties Length: 338aa    MW: 36670.9 Da    PI: 8.8953
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010680-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.4e-33182238158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    dep+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh hAlrR+RgsgGrF
  NNU_010680-RA 182 DEPIYVNAKQYRGILRRRQSRAKLEAQNKL-AKGRKPYLHESRHLHALRRARGSGGRF 238
                    79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-36180241IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.454181241IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-27183238IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23184206IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860186206IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23215238IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQNIAKKDSN QSSVWSTSPC VVSCPSWLNS AGSQISASSI SQSLSLKMDT QSQHCHNMKP  60
LGLQPQDQES SSTQSTGQSH HEVTTVAGGN HHGQFISTQS GLDNYGKHAE SQTKPVLPLG  120
TPDFVFPSQI GYSQSMARIP YPYAEPYMNG YLAAYGPQAV IHPQMIGMVP ARVPLPLDVT  180
DDEPIYVNAK QYRGILRRRQ SRAKLEAQNK LAKGRKPYLH ESRHLHALRR ARGSGGRFLD  240
TKKLQETKSV ASDGHEALDS ASLQQGRNLS ESEVLQSETG TAGASATSDI TSISNSDEIC  300
RQPDPRFSVY APRGGHSMQS GGVGIVCNGS ELRVPIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-20182242262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261975.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A1U8A4B30.0A0A1U8A4B3_NELNU; nuclear transcription factor Y subunit A-3-like isoform X1
STRINGXP_010261975.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-52nuclear factor Y, subunit A3