PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010692-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 105aa MW: 11852.7 Da PI: 10.4717

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010692-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.4e-31	43	101	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++W+KYG+K+vk+ +fpr+YYrC+ +gCpvkk++er+a+dp+ v++tYeg+Hnhe NNU_010692-RA 43 MDDGFKWKKYGKKMVKNRPFPRNYYRCSVEGCPVKKRIERDADDPQHVITTYEGTHNHE 101 69********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.1E-34	31	103	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-29	35	103	IPR003657	WRKY domain
PROSITE profile	PS50811	30.435	38	103	IPR003657	WRKY domain
SMART	SM00774	8.2E-33	43	102	IPR003657	WRKY domain
Pfam	PF03106	2.6E-25	44	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MTPAIAAALK LKGLAGVTCK RRGTNKAVGA RVVFRTKTEL DIMDDGFKWK KYGKKMVKNR 60 PFPRNYYRCS VEGCPVKKRI ERDADDPQHV ITTYEGTHNH ESPSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-28	30	103	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028062068.1	4e-41	probable WRKY transcription factor 50 isoform X1
Swissprot	Q8VWQ5	9e-39	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2P2J0H4	3e-38	A0A2P2J0H4_RHIMU; Uncharacterized protein WRKY transcription factor 14
STRING	XP_010273969.1	2e-46	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-40	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]