PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010743-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 383aa    MW: 43313.5 Da    PI: 4.6316
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010743-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36401312102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+++ed+++++++sws+  nsf+v+d+++f++++Lp+yFkhsn++SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++i
  NNU_010743-RA  40 FLTKTYDMVEDPATDSIVSWSKARNSFIVWDSHKFSTNLLPRYFKHSNYSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKNI 126
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+++
  NNU_010743-RA 127 KRRRH 131
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-6036129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3436129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEGVTVKEEE VTVVGTAPSS SSALPPQPME GLHDAGPPPF LTKTYDMVED PATDSIVSWS  60
KARNSFIVWD SHKFSTNLLP RYFKHSNYSS FIRQLNTYGF RKVDPDRWEF ANEGFLGGQR  120
HLLKNIKRRR HASQAQHMQQ QGAAAWVELG CYGLEDEIDR LKRDRHLLMV EIVKLRQQQQ  180
ASRDQLIGME ERLQGTERKQ QQMMAFLARA LRNPAFLQQL IQRNELKKEL GSGEIGRKRR  240
LPASRSIDNL PAEEIAASPV ETAQFVGYRN QAQEEVPTIE SDIETLFSVA VDNETTNSPV  300
QHQKADVIPS TSEPDLTTVV GDIAWEELLN DDLITGDGDE EVQMGDQSEI DIQVEDLIMK  360
PPDWGENVQD LVEQMGYLGS NKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263512912120Heat shock factor protein 1
5d5u_B3e-263512921129Heat shock factor protein 1
5d5v_B3e-263512921129Heat shock factor protein 1
5d5v_D3e-263512921129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262066.10.0PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-135HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U8A4J20.0A0A1U8A4J2_NELNU; heat shock factor protein HSF30
STRINGXP_010262066.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-116heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]