PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010757-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 472aa    MW: 53649.7 Da    PI: 9.1216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010757-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-11310354554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h + Er+RR+++N++f+ Lr+llP+        K +Ka++L  + eY++ L
  NNU_010757-RA 310 HMISERKRREKLNESFHALRSLLPPgF------KKDKASVLSSTREYLNAL 354
                    8899*********************55......99************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-15304372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-10305358No hitNo description
PROSITE profilePS5088815.148305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14309372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8310354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSMDGWYNEE TSQPISSSGS LSQRFFEDYR LALYNVDNGH VPGLAFKEGL SYIQLNESEL  60
LSRASSATQR RFYQEARIKT AAFMGCKSGE IEIGTSTDPT EQINMEMEMR KFFPAELHQL  120
PHFRELPHQH DQSHPSSSSS SLRSLSVNSP EYSSILFNMP STSSMPGETL KEVPIDQKAI  180
KSISTGILPH QQTGQAFPWL RSIQHPTPES DDAAMTRAML AVISSPSSSS SYQSQQQQQP  240
PPYNYKVMNQ RWSAFKRYRQ SALQPNVLRR DNLGRKNMLK RAIAFLKSLE LKRVQEQMQG  300
IRTTSNQLHH MISERKRREK LNESFHALRS LLPPGFKKDK ASVLSSTREY LNALKAQVLE  360
LQQKNQLLEA RLSPEKEVSE EGNTVTGSPG RRVDIRVTHA AESASEEREI DLQVTVLQDC  420
DLLELSIRLL ESLKQITDVS LVSMEAHTQM QQTGSYNRVT LRLNIKVMKE MN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313318ERKRRE
2314319RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262090.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A1U8AI240.0A0A1U8AI24_NELNU; putative transcription factor bHLH041
STRINGXP_010262090.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-44bHLH family protein