PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010766-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 314aa    MW: 35467.8 Da    PI: 7.0338
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010766-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-3911109199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCaaC+++r+kC++dC+la+yfp +++ +f n+hklFG+ n++kllk++ + +r+dam+s++y+A+ara+dPv G+++++++l+qq++++  el+l
  NNU_010766-RA  11 ACAACRYQRKKCPSDCPLARYFPPDRQGDFHNAHKLFGVGNITKLLKNIYPRQRDDAMRSIIYQANARAKDPVGGCLRIVRRLNQQIDRETMELKL 106
                    7********************************************************************************************998 PP

         DUF260  97 lke 99 
                    + +
  NNU_010766-RA 107 VLR 109
                    765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.53810111IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3611106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSNVRGGGAT ACAACRYQRK KCPSDCPLAR YFPPDRQGDF HNAHKLFGVG NITKLLKNIY  60
PRQRDDAMRS IIYQANARAK DPVGGCLRIV RRLNQQIDRE TMELKLVLRQ LAFYRAHAHQ  120
QQQYQIPMQE TASLFHHLHH GTLINPDPIN TYNPFHHLDR QQPQHQPLHI DDQLQLRQDS  180
LVADNQQFHG GLNQWTTIQD PRSMVMQDPG GSSRLETEVL SPLSSSLNVK NQPQLLNESG  240
DIIKPLLGIF DERESLPYDS KEPTAQSGGE VVSKEADNEF NSMVQKGDND AMENVHDLKG  300
AASLFTLTNS TVTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2671147114LOB family transfactor Ramosa2.1
5ly0_B2e-2671147114LOB family transfactor Ramosa2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262241.10.0PREDICTED: LOB domain-containing protein 22
TrEMBLA0A1U8AIG00.0A0A1U8AIG0_NELNU; LOB domain-containing protein 22
STRINGXP_010262241.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-36LOB domain-containing protein 22