PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010768-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 208aa    MW: 23687.1 Da    PI: 10.018
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010768-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.7e-40231231101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCa+Ck++r+kC+kdC+lapyfpa++ ++f nvhklFG+ n++kllk++++++r++a++s+++eA+ar +dPv G+ g+ ++l +ql++ k el++
  NNU_010768-RA  23 ACAVCKHQRKKCEKDCPLAPYFPANRYQDFLNVHKLFGVGNIIKLLKDIEPHQRKAAVESILFEAKARKNDPVLGCSGIATRLMSQLDSYKRELQM 118
                    7*********************************************************************************************** PP

         DUF260  97 lkeel 101
                    ++++l
  NNU_010768-RA 119 VNQQL 123
                    99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.46322123IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3723120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MYMKYQKNMM STSGRNASQS HSACAVCKHQ RKKCEKDCPL APYFPANRYQ DFLNVHKLFG  60
VGNIIKLLKD IEPHQRKAAV ESILFEAKAR KNDPVLGCSG IATRLMSQLD SYKRELQMVN  120
QQLAYYRQRE ALQKQQQLQW LLASSLSQKI ASSSSSSSQL FGSHYPTFTD SRLDDKHPVN  180
NVPDEKPIVG APPPTNVICK RQNQRLEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-27201268114LOB family transfactor Ramosa2.1
5ly0_B1e-27201268114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242281.12e-58PREDICTED: LOB domain-containing protein 25-like
TrEMBLA0A1U7Z6084e-57A0A1U7Z608_NELNU; LOB domain-containing protein 25-like
STRINGXP_010242281.16e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-38LOB domain-containing protein 22