PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010817-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HRT-like
Protein Properties Length: 532aa    MW: 59642.9 Da    PI: 9.1976
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010817-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like47.14.1e-15277307131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGv+l+dGsvC+++P++gRKRC  H G++i
  NNU_010817-RA 277 ICGVALGDGSVCRNKPIEGRKRCGSHRGKKI 307
                    8***************************996 PP
2HRT-like55.11.3e-17380410131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGv l+dGsvC++qP kgRKRC +HKG+Ri
  NNU_010817-RA 380 ICGVVLSDGSVCRNQPSKGRKRCGQHKGKRI 410
                    8*****************************7 PP
3HRT-like36.96.1e-12484511129
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 
                    +C ++l+dGsvC++++v+gR RC++HKGm
  NNU_010817-RA 484 VCEMALGDGSVCRNEAVEGR-RCAQHKGM 511
                    7******************9.*******9 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGGGDISSTR LKREECKRTK HDSVFSNWQI LIGPSDWENH SSGKEGVERY RSHNLPISCS  60
GPGLYELGIA TCCSDTGREI RKLDPDYIIV VYLGQADNVR TRLQEYGRDG SHLDHGNSVG  120
FLDKNKGVYL QRGPGLFKEI FSRGFPIVFR WAAMESKEEA EKTEAQLLGI FDYAWNKGGN  180
CARRPDDILI KLNKITSSTI RFPYIARKLQ KWRWDNPFIQ KQVGITIKGR TSTLNGTELN  240
TCNYKGWNNL LRILKVSRSQ PQLVTGKSSL NDGHTPICGV ALGDGSVCRN KPIEGRKRCG  300
SHRGKKINGS ILKLMTDADP KVFGMGLQDG CTQEDPLHER KINSCDEEPE KHLSQHSKTY  360
RSHPQMVVER CTTIEDHTTI CGVVLSDGSV CRNQPSKGRK RCGQHKGKRI NRITCKLSLE  420
KKSHVRGTGL ENESVCMEVP VIGRSINSCR DLKHDELISG TSNFEKSQPQ SVAGTCVSEK  480
CTAVCEMALG DGSVCRNEAV EGRRCAQHKG MMSNWSTWRQ YWKRNCMFVV LA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262192.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A1U8A6Q20.0A0A1U8A6Q2_NELNU; protein EFFECTOR OF TRANSCRIPTION 2
STRINGXP_010262192.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.19e-91effector of transcription2