PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010820-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 636aa    MW: 70695.1 Da    PI: 8.5849
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010820-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.5e-085455831854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  NNU_010820-RA 545 MFQNflHPYPKDAEKHLLAIRSGLTRSQVSNWFINARVR 583
                    5887779******************************88 PP
2BELL74.12.2e-24420487472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e ++kka+Ll ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++++ l++iS+ + +L+++ia+qi
  NNU_010820-RA 420 ETEAKKAQLLALLQVVDNRYNQCLDEIHTVISAFHAATELDP-QIHARFVLRTISFLYSNLRERIANQI 487
                    789***************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-22359485IPR006563POX domain
PfamPF075262.0E-23365484IPR006563POX domain
PROSITE profilePS5007111.289524587IPR001356Homeobox domain
SMARTSM003891.3E-5527591IPR001356Homeobox domain
CDDcd000866.25E-11527588No hitNo description
SuperFamilySSF466892.52E-15528597IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-25530593IPR009057Homeodomain-like
PfamPF059201.1E-14544583IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MNSGLNREIP DTLVVMIAEK QIMRVGGRQG IPGRDRREKE MGPPKPATEM SGAAPRVSWR  60
KLRLWHFISP LAIAILQIDG SRSQIMTGYP VPTNDVGDDL HMTNDEVVIY TSSSISRNIP  120
FGGPGIRDSS VVSSQSIDNS EFQRQLVEGA SLTAASLATL LATNGGVHED LNGVMISSSS  180
AFSLEDLRTF ASNGCCDTSN SSLSASVNCG YNGGNDFVPY IDPKKDASMT GQLDGKWDST  240
KLLGPQEISA KASVRMVCQP HSFMGNLDPH VWTSSNKSNI SVNNLYGYFM HGNELSLSLA  300
MCQPSIISVP TITDQCSEIS SSGIIRQSLH NGLGVGFGLE NAYGKRKELS LGFGSCMPIH  360
FSQIVSGSKY RHVAQQILSE IATYSLKNVD CMSYSTVGIG TEPKIPLSSE REVQTKVSDE  420
TEAKKAQLLA LLQVVDNRYN QCLDEIHTVI SAFHAATELD PQIHARFVLR TISFLYSNLR  480
ERIANQILAT REHINSGCIG EEKSFESSFL QKQCALQQLR RKDHQSWRPQ RGLPERSVSV  540
LRAWMFQNFL HPYPKDAEKH LLAIRSGLTR SQVSNWFINA RVRLWKPMIE EMYSEMNYRK  600
GHRTEDGKDN DRRRKRSVIQ DRGGSRIPEA RPRSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A9e-15533591159Homeobox protein Meis2
5bng_B9e-15533591159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262195.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_010262197.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_010262198.10.0PREDICTED: homeobox protein ATH1-like isoform X1
RefseqXP_010262199.10.0PREDICTED: homeobox protein ATH1-like isoform X1
TrEMBLA0A1U8A6Q70.0A0A1U8A6Q7_NELNU; homeobox protein ATH1-like isoform X1
STRINGXP_010262195.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-94homeobox gene 1