PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010832-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 216aa MW: 23587.1 Da PI: 8.8721

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010832-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.3	2.2e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s NNU_010832-RA 16 EQEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRS 76 5789*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-29	6	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MQDPYTFQSL KPHFAEQEQL KCPRCESTNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL 60 RNIPVGGGSR KNTKRSSNPK RVLSSSSSSS LSSSTQNAVP KPEPSGIFSL PVTTIDQDRR 120 MLDITGSFSS LLASNGQFGN LLEGLNPCSS GARTLQLGEF AENSNSTSIR NSAIELQANN 180 NAESFLASIQ GGDSSCWSSG NGWPDLAIYT PGSTFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262218.1	1e-158	PREDICTED: dof zinc finger protein DOF3.1
Swissprot	O82155	4e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A1U8A4Z1	1e-157	A0A1U8A4Z1_NELNU; dof zinc finger protein DOF3.1
STRING	XP_010262218.1	1e-158	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-42	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]