PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010848-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 182aa MW: 20348.1 Da PI: 6.1686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010848-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H NNU_010848-RA 30 YRCVFCKRGFTTAQALGGHMNIH 52 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-4	20	56	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.1E-6	28	57	No hit	No description
PROSITE profile	PS50157	11.344	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MESSHEDSKT SSEDGDQQDH QDDASTGRSY RCVFCKRGFT TAQALGGHMN IHRKERARIR 60 QPAAPSVSNK PDGKEVCPEF PPPSSSRRPL YPPTPDAQRS YHVYFPPSSS SSSAGTRHPQ 120 GHHAGDEFYI RKPQSSSLFE DDCNTNLCLQ IGPVHTNYGE EEKKREAEEV EPDLELRLGH 180 DP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262253.1	1e-133	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1U8AIG9	1e-132	A0A1U8AIG9_NELNU; transcriptional regulator SUPERMAN-like
STRING	XP_010262253.1	1e-133	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-14	C2H2 family protein