PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010873-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 410aa MW: 45306.7 Da PI: 4.7811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010873-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.1e-11	66	112	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f+ L ++l + + K +K++iL A++ +++L NNU_010873-RA 66 KACREKMRRDRMNDMFSDLTSILEPG---RPAKTDKSAILGDAIRVLNQL 112 678********************8...89**************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.227	61	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-8	65	117	No hit	No description
SuperFamily	SSF47459	2.75E-12	66	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-8	66	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-9	67	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-12	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.80.10.10	6.1E-43	123	307	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	8.75E-36	130	305	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDSFQDSSWN LLDYSIIEDG TSTDFYWNNQ DCCLDFDVSP IESILQEKAC TRKRGRNESC 60 SGPGSKACRE KMRRDRMNDM FSDLTSILEP GRPAKTDKSA ILGDAIRVLN QLRTEAQELK 120 DANEKLQEDI KNLKLVGVLP KSLNNLQFLA YLDVSSNRLE GKIKLGGSGS CRNLQELVLT 180 YNQFNGEIPS GLGNCSGLIF LAALGNKLTG QIPSSFGLLT KLELLYLNEN SLSAVIPPEI 240 GTCSSLKELL LQKNQLEGKI PSELGSLSKL EELALFTNRL TGEIPTLKYL SVYQNNLSGE 300 LPLEIPTLNV SDDEAGKGPN AAEALRAQAE KNELREEKLL LKADKERMEQ QLKTMSIMPT 360 GFVPPVPATY QAGANKLMTY PSFGGFPMWQ WIPPAVLDTS QDHVLRPPVA

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDSFQDSSWN LLDYSIIEDG TSTDFYWNNQ DCCLDFDVSP IESILQEKAC TRKRGRNESC  60
SGPGSKACRE KMRRDRMNDM FSDLTSILEP GRPAKTDKSA ILGDAIRVLN QLRTEAQELK  120
DANEKLQEDI KNLKLVGVLP KSLNNLQFLA YLDVSSNRLE GKIKLGGSGS CRNLQELVLT  180
YNQFNGEIPS GLGNCSGLIF LAALGNKLTG QIPSSFGLLT KLELLYLNEN SLSAVIPPEI  240
GTCSSLKELL LQKNQLEGKI PSELGSLSKL EELALFTNRL TGEIPTLKYL SVYQNNLSGE  300
LPLEIPTLNV SDDEAGKGPN AAEALRAQAE KNELREEKLL LKADKERMEQ QLKTMSIMPT  360
GFVPPVPATY QAGANKLMTY PSFGGFPMWQ WIPPAVLDTS QDHVLRPPVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gr8_A	4e-39	107	339	49	687	Leucine-rich repeat receptor-like protein kinase PEPR1
5gr8_D	4e-39	107	339	49	687	Leucine-rich repeat receptor-like protein kinase PEPR1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262298.1	5e-92	PREDICTED: transcription factor bHLH104-like
TrEMBL	A0A1U8AIK0	1e-90	A0A1U8AIK0_NELNU; transcription factor bHLH104-like
STRING	XP_010262298.1	2e-91	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	5e-33	bHLH family protein