PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010880-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 131aa    MW: 14742.4 Da    PI: 5.3267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010880-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-181061256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr+++ +g+++AeIrdps    r  +r +lg+f  ae+Aa+a+++a+ +l+g+
  NNU_010880-RA 10 RYRGVRRRP-WGKFAAEIRDPS----RpgARLWLGTFENAEDAARAYDRAAFALKGH 61
                   6********.**********96....355*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.24E-161069No hitNo description
PfamPF008475.5E-121061IPR001471AP2/ERF domain
PROSITE profilePS5103223.9991068IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-221069IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-301070IPR001471AP2/ERF domain
SMARTSM003809.9E-341074IPR001471AP2/ERF domain
PRINTSPR003671.2E-101122IPR001471AP2/ERF domain
PRINTSPR003671.2E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MKQMEKVDVR YRGVRRRPWG KFAAEIRDPS RPGARLWLGT FENAEDAARA YDRAAFALKG  60
HLAILNFPNE YQSHSTAAPD DASSSFSSAP SSETVDTATG GEKQVIEFEY LDDKLLEELL  120
KSEEEKQGKR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-311011514114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262304.12e-93PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-46ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8AIK54e-92A0A1U8AIK5_NELNU; ethylene-responsive transcription factor ERF098-like
STRINGXP_010262304.16e-93(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]