PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010934-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 496aa    MW: 55128.9 Da    PI: 5.3297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010934-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11233276755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +Er+RR+++N+++  Lr+l+Pk +      K++ a+iL  A+e++k+Lq
  NNU_010934-RA 233 VAERKRRKKLNERLYSLRSLVPKiS------KMDRASILGDAIEFVKELQ 276
                    68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.73E-13223280No hitNo description
PROSITE profilePS5088815.586226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16232289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-15232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9233276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.841395472IPR002912ACT domain
CDDcd048733.57E-5396460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAQYRNASME QQEAVVVSHE DTGLHQQPPM LGQELHGLVM ADGFTADDNT DTVVDQQVKS  60
FSTNGFSPKD SNYHYQQPWL LPPTAVGDNL NLPWDLSAEQ VSLCSSAKNL FGGSARQLAL  120
SSENRPRSDI FFEGPTPAHP VVSDKHEAVE HGFQEMVALQ QCLLANGDSL LHPSMLPEST  180
PNKEELGHDR DSVKLESGKA DTVSDCSDQI EDEDDQKVVG RTSGRKHQSK NLVAERKRRK  240
KLNERLYSLR SLVPKISKMD RASILGDAIE FVKELQKKVK DLQDELEEPS DDERAKGATG  300
IGYHGNDNRN NSSNTAATDQ NGSVYNNLTN PENDKLVMGM STLGMIDHGT GRSSSVSKTT  360
EASTQNPDSV ITDDKTTQQM EVQVEVTQVD GNEFFLKVFC EHRTGGFARL MEAMNSLGLE  420
VTNANVTTFR GLVLNVFKVE QKRDNEVVQA DHVKESLLEL TRNSEPVASS ENGLMADYHH  480
HHHRRHLHFH HLQNQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13224279257Transcription factor MYC2
5gnj_B2e-13224279257Transcription factor MYC2
5gnj_E2e-13224279257Transcription factor MYC2
5gnj_F2e-13224279257Transcription factor MYC2
5gnj_G2e-13224279257Transcription factor MYC2
5gnj_I2e-13224279257Transcription factor MYC2
5gnj_M2e-13224279257Transcription factor MYC2
5gnj_N2e-13224279257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234241ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876341.11e-112transcription factor ABORTED MICROSPORES
TrEMBLA0A2G5DJ541e-127A0A2G5DJ54_AQUCA; Uncharacterized protein
TrEMBLA0A2G5DJ591e-127A0A2G5DJ59_AQUCA; Uncharacterized protein
STRINGXP_010262502.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-57bHLH family protein