PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011020-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 684aa    MW: 75113.8 Da    PI: 8.8543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011020-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07585634147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    NNU_011020-RA 585 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 634
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.2E-5390478IPR029071Ubiquitin-related domain
PROSITE profilePS500539.308395465IPR000626Ubiquitin domain
CDDcd017690.00818399465No hitNo description
PROSITE profilePS5129414.733580639IPR017930Myb domain
SMARTSM007172.0E-7584637IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10585635IPR009057Homeodomain-like
CDDcd116601.92E-17586636No hitNo description
SuperFamilySSF466893.23E-15586667IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVLQKRFDYG FNGYHVPRAS RSARGRGSVK KKVEDNSMCA FELLATVAGK LLQEKETSPI  60
HAKALAGNDR TTIVKHIVKE EHQDEVKILK SEPFDQGSCN EGVFASGLRS QDHNQIHVSK  120
EYSHVQNVVG LGHSSIIRKS DCLEKFGCGE DFLNGKRRNE FGRLRSTEGE GSPANEEPFG  180
GKVENGTDGV PEAQKISSGV NGTVPDACSS GDPMKLDRKP CVLVSSDSSV EIPLHSNCIS  240
HASFPRCQDD IKIVNKDDDE NSSGCTQPST INVKAFRPAG RIGDRRIRKL LASKYWKVAP  300
KLKDGELSNH DGDMNSFSCN RKTCYTRQRS QRNSPFKKRK LFDRSSVSTS DGVISSEGVF  360
NTPEKGINGV TTGSASGASS VAGQQVSFQP RDSHVRLSIK SFRIPELFIE IPETETIGSL  420
KRTVMEAVTA VLGGGLRVGV LLQGKKVRDD NKTLLQTGIS HDNKLDSLGF TLEPNPTNAP  480
PLICPEDPPF LLPCDAPQPL NRYPTPAALD PGASEASPDP PMASLANCVE SDHDSVPSPI  540
DMSTDKTTPD SRALVAIPAM SVEALAVVPY NRKSRRSELV QRRIRRPFSV AEVEALVQAV  600
EKLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQDLLDRVLS  660
AHAYWSQQQA KQQVKQQPET CLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-595696751107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289DRRIRKL
2330339QRNSPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262528.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262529.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262530.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262531.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262533.10.0PREDICTED: telomere repeat-binding protein 5
TrEMBLA0A1U8A5P80.0A0A1U8A5P8_NELNU; telomere repeat-binding protein 5
STRINGXP_010262528.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-125TRF-like 2