PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011021-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 746aa    MW: 84235.6 Da    PI: 5.0924
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011021-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.41.5e-1213697401374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA++v+++d ++a +lL+++++++s +gd +qRla yf+e+L+ar+a+++s++y a+++++ts    ++ l+a+kl+  ++P+ k+s++
  NNU_011021-RA 369 LRTLLIHCAQFVAADDRKNACELLKQIRQHSSRTGDGNQRLANYFAEGLEARMAGTGSQIYTAFSTKRTS---AADILKAYKLYLAACPFKKLSNF 461
                    6789************************************************************999999...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      N++Il+  e+++r+HiiDf+i +G+QWp+L+++L++R +gpp+lRiTg++ p++g   +e++eetg+ La++Ae++gvpf++n+ +a+++e+++
  NNU_011021-RA 462 FSNRTILNLSEKATRLHIIDFGILYGFQWPCLIHQLSNRHGGPPNLRITGIELPQPGfrPTERVEETGRHLANYAERFGVPFQYNA-IAQKWETIQ 556
                    ********************************************************9*****************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +e+L+++++E+l+Vn+ ++  +llde+v +es+r+++L+l+++++P+++v+   +  ++++ F++rf eal ++s+lfd+l++++pre+eer+++E
  NNU_011021-RA 557 IEDLKIEKDEMLVVNCLFRFRNLLDETVVVESPRNAILNLIRKMNPDIFVHGVVNGAYSAPFFVTRFREALFHFSSLFDMLDTNVPRENEERVVIE 652
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    re++gre+ nvvaceg+er+er et+++W+ r ++aGFk++pl+ ++ k+ak  ++  + + + ++e+s+++++gWk+r ++++S+Wr
  NNU_011021-RA 653 REMFGREALNVVACEGSERVERPETYKQWQVRTTRAGFKQLPLDREILKKAKDKVKSSYHKDFVIDEDSQWILQGWKGRIIYALSSWR 740
                    ***********************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.905343720IPR005202Transcription factor GRAS
PfamPF035145.3E-119369740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MNGLTFNDDP VSYQTIANRL KLDETTVDPT FMALPLLQPD PDSNNLAPAS TLIPEEDSHE  60
DLDFSDVVLK YISQMLMEED MEDKACMFQE SSALQAAEKP FYEILGEKYP PSPIQTPLYV  120
GHNSESSDDP LTANFINYSS SSCCISCNNN TADTRWISDL SDCRTTWTGI LLPGCTSQST  180
SPSSFSSSSS GASVLDGLLE SPVSVVQVPD IISENESVWQ FRRGVEEASK FLPNDNSLII  240
DLDNYASFPR EPKEDAEVLV KIEQKDEREN SPNGLRGKKN PHPEDTDLEE RRSNKQSAVY  300
TEETVRSEEF DRVLLCSGGR AGAPMPTLQE EALQNEANRN LHQNGHSKVS NSGKSRGKKQ  360
AGKKETVDLR TLLIHCAQFV AADDRKNACE LLKQIRQHSS RTGDGNQRLA NYFAEGLEAR  420
MAGTGSQIYT AFSTKRTSAA DILKAYKLYL AACPFKKLSN FFSNRTILNL SEKATRLHII  480
DFGILYGFQW PCLIHQLSNR HGGPPNLRIT GIELPQPGFR PTERVEETGR HLANYAERFG  540
VPFQYNAIAQ KWETIQIEDL KIEKDEMLVV NCLFRFRNLL DETVVVESPR NAILNLIRKM  600
NPDIFVHGVV NGAYSAPFFV TRFREALFHF SSLFDMLDTN VPRENEERVV IEREMFGREA  660
LNVVACEGSE RVERPETYKQ WQVRTTRAGF KQLPLDREIL KKAKDKVKSS YHKDFVIDED  720
SQWILQGWKG RIIYALSSWR PADGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-513587417379Protein SCARECROW
5b3h_D2e-513587417379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262535.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8AJ410.0A0A1U8AJ41_NELNU; scarecrow-like protein 14
STRINGXP_010262535.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]